ONMR: An Orthopedic and Nutritional Mendelian Randomization Database

Grape (ukb-b-12051)

Mendelian Randomization Results

Intake (exposure) Outcome Method Number of SNPs b se P-value
Grape (👉 📊) Fractured bones in last 5 years (UKB data field 2463) (Firth correction) (ebi-a-GCST90013913) Inverse variance weighted 8 0.233571947 0.119012346 0.049694316
Grape (👉 📊) Fractured bones in last 5 years (UKB data field 2463) (SPA correction) (ebi-a-GCST90013963) Inverse variance weighted 8 0.233571947 0.119012346 0.049694316
Grape (👉 📊) Bone mineral density (ebi-a-GCST90014022) Inverse variance weighted 8 0.116398022 0.059200725 0.049280279
Grape (👉 📊) Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS)) (ebi-a-GCST90016610) Inverse variance weighted 3 0.332021 0.157118432 0.034584562
Grape (👉 📊) Neck circumference (BMI adjusted) (ebi-a-GCST90017136) MR Egger 8 2.864931848 1.104822446 0.041039852
Grape (👉 📊) Compression fracture (ebi-a-GCST90018608) Inverse variance weighted 3 1.230129059 0.537890709 0.022198752
Grape (👉 📊) Compression fracture (ebi-a-GCST90018828) Weighted median 9 1.093956248 0.481871 0.023193852
Grape (👉 📊) Compression fracture (ebi-a-GCST90018828) Inverse variance weighted 9 0.786762802 0.370915572 0.033910262
Grape (👉 📊) Benign neoplasm: Skin of scalp and neck (finn-b-CD2_BENIGN_SKIN_SCALPNECK) Weighted median 8 -3.275253323 1.594066931 0.039912598
Grape (👉 📊) Benign neoplasm: Skin of upper limb, including shoulder (finn-b-CD2_BENIGN_SKIN_UPPERLIMB) Inverse variance weighted 8 -2.668037844 1.268116525 0.035383904
Grape (👉 📊) Loose body in joint (finn-b-M13_LOOSEJOINT) Weighted median 8 3.102678645 1.554765152 0.045978229
Grape (👉 📊) Loose body in joint (finn-b-M13_LOOSEJOINT) Inverse variance weighted 8 2.207962818 1.092796636 0.043334659
Grape (👉 📊) Osteomalacia (finn-b-M13_OSTEOMALACIA) Inverse variance weighted 8 -4.164115353 2.000627625 0.037396897
Grape (👉 📊) Osteonecrosis (finn-b-M13_OSTEONECROSIS) Inverse variance weighted 8 -1.854673665 0.848819068 0.028888501
Grape (👉 📊) Otherdisorders of bone (finn-b-M13_OTHERBONE) Inverse variance weighted 8 0.74679066 0.357089543 0.036498847
Grape (👉 📊) Peroneal tendinitis (finn-b-M13_PERONEALTEND) Inverse variance weighted 8 -4.8326895 1.717322934 0.004891658
Grape (👉 📊) Fracture of shoulder and upper arm (finn-b-ST19_FRACT_SHOUL_UPPER_ARM) Inverse variance weighted 8 -0.790772482 0.278124727 0.004465887
Grape (👉 📊) Injuries to the ankle and foot (finn-b-ST19_INJURI_ANKLE_FOOT) Inverse variance weighted 8 0.441531613 0.220876519 0.045608622
Grape (👉 📊) Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) Weighted median 8 -0.496900251 0.234528239 0.034113928
Grape (👉 📊) Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) Inverse variance weighted 8 -0.437486828 0.173938633 0.01189719
Grape (👉 📊) Rheumatoid arthritis (ieu-a-832) Weighted median 3 -1.694932635 0.736443169 0.02136272
Grape (👉 📊) Rheumatoid arthritis (ieu-a-832) Inverse variance weighted 3 -1.460448117 0.62469466 0.019394557
Grape (👉 📊) Lumbar spine bone mineral density (ieu-a-982) Inverse variance weighted 8 0.384490429 0.1422368 0.006868135
Grape (👉 📊) Bone morphogenetic protein 6 (prot-a-256) Weighted median 8 0.978793632 0.496279958 0.048579813
Grape (👉 📊) Bone morphogenetic protein 6 (prot-a-256) Inverse variance weighted 8 0.976463992 0.394827707 0.013393186
Grape (👉 📊) Fractured/broken bones in last 5 years (ukb-a-308) Inverse variance weighted 9 0.022381935 0.011017309 0.042201805
Grape (👉 📊) Fractured bone site(s): Other bones (ukb-a-441) Inverse variance weighted 9 0.020995414 0.00829515 0.01137226
Grape (👉 📊) Non-cancer illness code, self-reported: sciatica (ukb-b-8194) Weighted median 3 -0.014609565 0.006853623 0.033035167
Grape (👉 📊) Non-cancer illness code, self-reported: sciatica (ukb-b-8194) Inverse variance weighted 3 -0.012984385 0.005356877 0.015356005
Grape (👉 📊) Operative procedures - main OPCS: W20.1 Primary open reduction of fracture of long bone and extramedullary fixation using plate NEC (ukb-b-8379) Inverse variance weighted 2 -0.014721125 0.005042383 0.003506182
Grape (👉 📊) Diagnoses - main ICD10: S72 Fracture of femur (ukb-d-S72) Weighted median 8 0.00863772 0.003627236 0.017249294
Grape (👉 📊) Diagnoses - main ICD10: S72 Fracture of femur (ukb-d-S72) Inverse variance weighted 8 0.006475954 0.002852953 0.023212896
Grape (👉 📊) M17 Gonarthrosis [arthrosis of knee] (ukb-e-M17_AFR) Weighted median 4 -7.304528481 2.886492242 0.011387086
Grape (👉 📊) M17 Gonarthrosis [arthrosis of knee] (ukb-e-M17_AFR) Inverse variance weighted 4 -6.463207608 2.250907689 0.00408686

Mendelian Randomization Results (Single SNP)

Intake (exposure) Outcome SNP b se P-value
Grape Fractured bones in last 5 years (UKB data field 2463) (Firth correction) (ebi-a-GCST90013913) All - Inverse variance weighted 0.233571946658742 0.119012346135146 0.0496943160667957
Grape Fractured bones in last 5 years (UKB data field 2463) (SPA correction) (ebi-a-GCST90013963) All - Inverse variance weighted 0.233571946658742 0.119012346135146 0.0496943160667957
Grape Bone mineral density (ebi-a-GCST90014022) rs139190506 0.224420451549428 0.0956280343902925 0.0189351073296385
Grape Bone mineral density (ebi-a-GCST90014022) rs9320216 0.462682045519642 0.0995620992795294 3.36519098029407e-06
Grape Bone mineral density (ebi-a-GCST90014022) All - Inverse variance weighted 0.116398021529885 0.0592007248755072 0.0492802790289803
Grape Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS)) (ebi-a-GCST90016610) rs10497191 0.663269920709096 0.283397147939341 0.0192617792731853
Grape Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS)) (ebi-a-GCST90016610) All - Inverse variance weighted 0.332021000220432 0.157118431615715 0.0345845623867471
Grape Neck circumference (BMI adjusted) (ebi-a-GCST90017136) All - MR Egger 2.86493184787398 1.10482244639005 0.0410398523706115
Grape Compression fracture (ebi-a-GCST90018608) All - Inverse variance weighted 1.23012905922792 0.537890709116929 0.0221987523295038
Grape Compression fracture (ebi-a-GCST90018828) All - Inverse variance weighted 0.786762802475915 0.370915571646458 0.0339102615455302
Grape Benign neoplasm: Skin of scalp and neck (finn-b-CD2_BENIGN_SKIN_SCALPNECK) rs139190506 -5.29229819495978 1.88542142255432 0.0050011807177176
Grape Benign neoplasm: Skin of upper limb, including shoulder (finn-b-CD2_BENIGN_SKIN_UPPERLIMB) All - Inverse variance weighted -2.66803784424948 1.26811652496232 0.0353839038933215
Grape Loose body in joint (finn-b-M13_LOOSEJOINT) All - Inverse variance weighted 2.20796281834902 1.09279663586727 0.0433346589596178
Grape Osteomalacia (finn-b-M13_OSTEOMALACIA) rs117720571 -18.434505413338 6.6923241394056 0.0058768508889471
Grape Osteomalacia (finn-b-M13_OSTEOMALACIA) All - Inverse variance weighted -4.16411535302677 2.0006276245846 0.037396896569604
Grape Osteonecrosis (finn-b-M13_OSTEONECROSIS) rs9320216 -6.5905435477119 2.8256989886972 0.0196818302095598
Grape Osteonecrosis (finn-b-M13_OSTEONECROSIS) All - Inverse variance weighted -1.85467366545847 0.848819068218134 0.0288885009498411
Grape Otherdisorders of bone (finn-b-M13_OTHERBONE) All - Inverse variance weighted 0.746790659582401 0.357089543347102 0.0364988473376589
Grape Peroneal tendinitis (finn-b-M13_PERONEALTEND) All - Inverse variance weighted -4.83268949972496 1.71732293395515 0.0048916576536758
Grape Fracture of shoulder and upper arm (finn-b-ST19_FRACT_SHOUL_UPPER_ARM) rs139190506 -1.26552160968175 0.455279115678192 0.0054415668853465
Grape Fracture of shoulder and upper arm (finn-b-ST19_FRACT_SHOUL_UPPER_ARM) rs62355507 -2.12377743075532 1.03558806608038 0.0402870461398839
Grape Fracture of shoulder and upper arm (finn-b-ST19_FRACT_SHOUL_UPPER_ARM) All - Inverse variance weighted -0.790772481851648 0.278124726747771 0.0044658872796799
Grape Injuries to the ankle and foot (finn-b-ST19_INJURI_ANKLE_FOOT) rs117720571 1.37617353781562 0.693918012712112 0.0473458445416492
Grape Injuries to the ankle and foot (finn-b-ST19_INJURI_ANKLE_FOOT) rs139167288 4.20949972909518 2.01625428932635 0.0368174898261118
Grape Injuries to the ankle and foot (finn-b-ST19_INJURI_ANKLE_FOOT) All - Inverse variance weighted 0.441531613495829 0.22087651851076 0.045608621821649
Grape Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) rs139190506 -0.811528593200393 0.284227922499662 0.0043009244662265
Grape Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) All - Inverse variance weighted -0.437486828391672 0.173938633406149 0.0118971903570771
Grape Rheumatoid arthritis (ieu-a-832) rs10497191 -2.0398142844222 1.01754047453948 0.0450002910059625
Grape Rheumatoid arthritis (ieu-a-832) All - Inverse variance weighted -1.46044811697788 0.624694660239849 0.019394556842712
Grape Lumbar spine bone mineral density (ieu-a-982) rs139167288 1.3434350731443 0.430355788333032 0.0017981942091437
Grape Lumbar spine bone mineral density (ieu-a-982) All - Inverse variance weighted 0.384490429332304 0.142236799649402 0.006868134829773
Grape Bone morphogenetic protein 6 (prot-a-256) All - Inverse variance weighted 0.976463991765039 0.394827706608869 0.0133931857020053
Grape Fractured/broken bones in last 5 years (ukb-a-308) All - Inverse variance weighted 0.022381934747793 0.0110173091352005 0.0422018047056091
Grape Fractured bone site(s): Other bones (ukb-a-441) rs10915419 0.0510317774892367 0.0230386113578897 0.0267563307279675
Grape Fractured bone site(s): Other bones (ukb-a-441) All - Inverse variance weighted 0.0209954140546591 0.0082951497569682 0.0113722603158599
Grape Non-cancer illness code, self-reported: sciatica (ukb-b-8194) All - Inverse variance weighted -0.0129843845121379 0.0053568765448893 0.0153560054512462
Grape Operative procedures - main OPCS: W20.1 Primary open reduction of fracture of long bone and extramedullary fixation using plate NEC (ukb-b-8379) rs10497191 -0.0156479845639 0.0071625312792064 0.0289108248116583
Grape Operative procedures - main OPCS: W20.1 Primary open reduction of fracture of long bone and extramedullary fixation using plate NEC (ukb-b-8379) All - Inverse variance weighted -0.0147211247009021 0.0050423826263017 0.0035061824055053
Grape Diagnoses - main ICD10: S72 Fracture of femur (ukb-d-S72) rs10497191 0.0172335614579879 0.0076182580119991 0.0236887932056469
Grape Diagnoses - main ICD10: S72 Fracture of femur (ukb-d-S72) All - Inverse variance weighted 0.0064759540875145 0.00285295326223 0.0232128964600362
Grape M17 Gonarthrosis [arthrosis of knee] (ukb-e-M17_AFR) rs10497191 -9.6777111158009 4.21176399650276 0.0215742590099806
Grape M17 Gonarthrosis [arthrosis of knee] (ukb-e-M17_AFR) All - Inverse variance weighted -6.46320760842736 2.2509076890959 0.0040868604800264