ONMR: An Orthopedic and Nutritional Mendelian Randomization Database

Green bean (ukb-b-2299)

Mendelian Randomization Results

Intake (exposure) Outcome Method Number of SNPs b se P-value
Green bean (👉 📊) Total body bone mineral density (age 30-45) (ebi-a-GCST005346) Inverse variance weighted 16 0.378470195 0.19296733 0.049842
Green bean (👉 📊) Osteoprotegerin levels (ebi-a-GCST90010243) MR Egger 16 -1.575848902 0.702023473 0.041464238
Green bean (👉 📊) Osteoprotegerin levels (ebi-a-GCST90010243) Weighted median 16 -1.208367306 0.555938387 0.029737943
Green bean (👉 📊) Osteoprotegerin levels (ebi-a-GCST90010243) Inverse variance weighted 16 -0.825425324 0.418709844 0.048683399
Green bean (👉 📊) Osteoprotegerin levels (ebi-a-GCST90010243) Weighted mode 16 -1.24269596 0.563420537 0.04342647
Green bean (👉 📊) Spine arthritis or spondylitis (ebi-a-GCST90038657) Weighted median 14 0.007020076 0.003127903 0.024810558
Green bean (👉 📊) Spine arthritis or spondylitis (ebi-a-GCST90038657) Inverse variance weighted 14 0.006726609 0.00220861 0.002321936
Green bean (👉 📊) Osteoarthritis (ebi-a-GCST90038686) Weighted median 14 0.020264863 0.009139992 0.026611873
Green bean (👉 📊) Benign neoplasm: Scapula and long bones of upper limb (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER) MR Egger 17 -7.783514202 3.125451767 0.02497611
Green bean (👉 📊) Benign neoplasm: Scapula and long bones of upper limb (all cancers excluded) (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER_EXALLC) MR Egger 17 -7.752310798 3.131737493 0.025723491
Green bean (👉 📊) Carcinoma in situ of skin of scalp and neck (finn-b-CD2_INSITU_SKIN_SCALPNECK) Inverse variance weighted 17 2.7289456 1.312839172 0.037648659
Green bean (👉 📊) Gonarthrosis [arthrosis of knee](FG) (finn-b-KNEE_ARTHROSIS) Weighted median 17 0.374058559 0.188041906 0.046675846
Green bean (👉 📊) Disorders of continuity of bone (finn-b-M13_BONECONTINUITY) Weighted median 17 1.743884103 0.717040558 0.01501331
Green bean (👉 📊) Disorders of continuity of bone (finn-b-M13_BONECONTINUITY) Weighted mode 17 1.874902778 0.826931895 0.037580606
Green bean (👉 📊) Other juvenile arthritis (finn-b-M13_JUVEARTH) Inverse variance weighted 17 1.383689938 0.684333419 0.043181218
Green bean (👉 📊) Juvenile osteochondrosis (finn-b-M13_JUVOSTEOCHONRHIP) MR Egger 17 -3.39862294 1.543091755 0.043688588
Green bean (👉 📊) Lower back pain or/and sciatica (finn-b-M13_LOWBACKPAINORANDSCIATICA) MR Egger 17 -0.640956191 0.277672383 0.035646292
Green bean (👉 📊) Other joint disorders (finn-b-M13_OTHERJOINT) Inverse variance weighted 17 0.219984405 0.098808533 0.025989374
Green bean (👉 📊) Short Achilles tendon (acquired) (finn-b-M13_SHORTACHILLES) Inverse variance weighted 17 2.263040944 0.920041121 0.013904654
Green bean (👉 📊) Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) Weighted median 17 3.742914477 1.473636876 0.011087897
Green bean (👉 📊) Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) Inverse variance weighted 17 3.329405016 1.25175909 0.007819148
Green bean (👉 📊) Osteomyelitis (ieu-b-4975) Inverse variance weighted 17 0.617497359 0.225887552 0.006263671
Green bean (👉 📊) Bone morphogenetic protein 7 (prot-a-257) Inverse variance weighted 16 -0.640997068 0.2763564 0.020370215
Green bean (👉 📊) Bone morphogenetic protein receptor type-1A (prot-a-259) MR Egger 16 1.276774509 0.566910886 0.040886946
Green bean (👉 📊) Bone morphogenetic protein receptor type-1A (prot-a-259) Inverse variance weighted 16 0.645772172 0.272916345 0.017972175
Green bean (👉 📊) Non-cancer illness code self-reported: osteoporosis (ukb-a-87) Inverse variance weighted 17 -0.006485765 0.003222189 0.044130992
Green bean (👉 📊) Diagnoses - secondary ICD10: M06.99 Rheumatoid arthritis, unspecified (Site unspecified) (ukb-b-11874) Inverse variance weighted 2 -0.00870983 0.003673393 0.017737227
Green bean (👉 📊) Non-cancer illness code, self-reported: osteoarthritis (ukb-b-14486) Weighted median 15 0.022112066 0.008868726 0.012657505
Green bean (👉 📊) Non-cancer illness code, self-reported: spine arthritis/spondylitis (ukb-b-5389) Weighted median 8 0.009993468 0.004043057 0.013444971
Green bean (👉 📊) Non-cancer illness code, self-reported: spine arthritis/spondylitis (ukb-b-5389) Inverse variance weighted 8 0.008898868 0.00305518 0.003583018
Green bean (👉 📊) Operation code: reduction or fixation of bone fracture (ukb-b-847) Weighted median 12 0.021203915 0.007764208 0.006314587
Green bean (👉 📊) Operation code: reduction or fixation of bone fracture (ukb-b-847) Inverse variance weighted 12 0.015962798 0.006640095 0.016216706
Green bean (👉 📊) Fractured bone site(s): Wrist (ukb-b-9571) Inverse variance weighted 9 0.008520847 0.004314407 0.048270961
Green bean (👉 📊) Diagnoses - main ICD10: M65 Synovitis and tenosynovitis (ukb-d-M65) Inverse variance weighted 17 0.004707187 0.002248846 0.036335169
Green bean (👉 📊) Diagnoses - main ICD10: S02 Fracture of skull and facial bones (ukb-d-S02) MR Egger 15 0.010817589 0.003591781 0.010009894
Green bean (👉 📊) Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) MR Egger 16 0.012646324 0.004319458 0.011020386
Green bean (👉 📊) Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) Inverse variance weighted 16 0.00501325 0.002266986 0.027007026
Green bean (👉 📊) Heel bone mineral density (BMD) (ukb-e-3148_AFR) Inverse variance weighted 8 -1.180558899 0.575474893 0.040222987
Green bean (👉 📊) Heel bone mineral density (BMD) T-score, automated (ukb-e-78_p1_AFR) Inverse variance weighted 8 -1.260708265 0.576309774 0.028702167

Mendelian Randomization Results (Single SNP)

Intake (exposure) Outcome SNP b se P-value
Green bean Total body bone mineral density (age 30-45) (ebi-a-GCST005346) rs115617710 1.71351513204339 0.658960219784543 0.0093133696699927
Green bean Total body bone mineral density (age 30-45) (ebi-a-GCST005346) rs79842475 1.92427415247043 0.666578627979952 0.0038919086490846
Green bean Total body bone mineral density (age 30-45) (ebi-a-GCST005346) All - Inverse variance weighted 0.37847019497289 0.192967329524237 0.0498420003411211
Green bean Osteoprotegerin levels (ebi-a-GCST90010243) rs115617710 -4.417328358894 1.97518681467591 0.0253248997060336
Green bean Osteoprotegerin levels (ebi-a-GCST90010243) rs146548702 -1.66670861781455 0.73592958499827 0.0235270165941654
Green bean Osteoprotegerin levels (ebi-a-GCST90010243) All - Inverse variance weighted -0.825425323672198 0.418709844018145 0.0486833993167307
Green bean Osteoprotegerin levels (ebi-a-GCST90010243) All - MR Egger -1.57584890217551 0.702023473345805 0.0414642379952986
Green bean Spine arthritis or spondylitis (ebi-a-GCST90038657) rs115617710 0.020407003555981 0.0085215795811941 0.016631962549772
Green bean Spine arthritis or spondylitis (ebi-a-GCST90038657) rs73790412 0.0175077644689421 0.0080784926860292 0.0302190873673013
Green bean Spine arthritis or spondylitis (ebi-a-GCST90038657) All - Inverse variance weighted 0.0067266090281919 0.0022086102961759 0.0023219363822415
Green bean Osteoarthritis (ebi-a-GCST90038686) rs117462537 -0.0544747370898416 0.024388754895004 0.0255093657044128
Green bean Osteoarthritis (ebi-a-GCST90038686) rs7047957 0.0595304349382175 0.0250919356137541 0.0176685106232341
Green bean Benign neoplasm: Scapula and long bones of upper limb (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER) rs1153592 13.0650173851503 5.65248161481892 0.020812026681461
Green bean Benign neoplasm: Scapula and long bones of upper limb (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER) rs7047957 17.2686846272917 5.75324570743448 0.0026860432669628
Green bean Benign neoplasm: Scapula and long bones of upper limb (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER) All - MR Egger -7.78351420235598 3.12545176662556 0.0249761100269361
Green bean Benign neoplasm: Scapula and long bones of upper limb (all cancers excluded) (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER_EXALLC) rs1153592 13.1450198467645 5.64940459706453 0.0199760516315283
Green bean Benign neoplasm: Scapula and long bones of upper limb (all cancers excluded) (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER_EXALLC) rs7047957 17.241842112327 5.75324570743448 0.0027274948691419
Green bean Benign neoplasm: Scapula and long bones of upper limb (all cancers excluded) (finn-b-CD2_BENIGN_BONE_SCAPULA_LONG_UPPER_EXALLC) All - MR Egger -7.75231079818485 3.13173749290406 0.0257234911279528
Green bean Carcinoma in situ of skin of scalp and neck (finn-b-CD2_INSITU_SKIN_SCALPNECK) All - Inverse variance weighted 2.72894559973785 1.3128391723736 0.0376486592031684
Green bean Disorders of continuity of bone (finn-b-M13_BONECONTINUITY) rs11485443 -7.93122818341384 3.34603446202373 0.0177718941554428
Green bean Disorders of continuity of bone (finn-b-M13_BONECONTINUITY) rs7047957 -3.85637464992887 1.9460823349409 0.0475229972117546
Green bean Other juvenile arthritis (finn-b-M13_JUVEARTH) rs1153592 6.7202067755931 2.51084648758423 0.0074402095739778
Green bean Other juvenile arthritis (finn-b-M13_JUVEARTH) rs13002529 -6.93257334196632 3.18860446404625 0.0296922486658723
Green bean Other juvenile arthritis (finn-b-M13_JUVEARTH) All - Inverse variance weighted 1.38368993778371 0.684333418516862 0.0431812182887884
Green bean Juvenile osteochondrosis (finn-b-M13_JUVOSTEOCHONRHIP) rs146548702 -6.70326904319919 3.3956832268823 0.0483753691671712
Green bean Juvenile osteochondrosis (finn-b-M13_JUVOSTEOCHONRHIP) All - MR Egger -3.39862293998197 1.54309175538682 0.0436885875821004
Green bean Lower back pain or/and sciatica (finn-b-M13_LOWBACKPAINORANDSCIATICA) rs149262767 -1.0938660544618 0.554649895339976 0.0485897565862954
Green bean Lower back pain or/and sciatica (finn-b-M13_LOWBACKPAINORANDSCIATICA) All - MR Egger -0.640956191471613 0.277672382648812 0.0356462917015107
Green bean Other joint disorders (finn-b-M13_OTHERJOINT) All - Inverse variance weighted 0.21998440509529 0.0988085334541501 0.0259893740474598
Green bean Short Achilles tendon (acquired) (finn-b-M13_SHORTACHILLES) All - Inverse variance weighted 2.26304094416166 0.920041120530638 0.013904654336919
Green bean Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) rs115038961 9.3339884754545 4.44365033278242 0.0356828843094643
Green bean Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) rs17068900 8.01266657171154 3.35213665587932 0.0168338724425035
Green bean Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) rs73790412 8.68666525333899 3.18793724825101 0.0064329823461795
Green bean Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) rs75384405 14.1844114385091 5.79292409820194 0.0143422408090241
Green bean Burn and corrosion of head and neck (finn-b-ST19_BURN_CORROSION_HEAD_NECK) All - Inverse variance weighted 3.329405016032 1.25175909042644 0.007819148031687
Green bean Osteomyelitis (ieu-b-4975) rs9899110 1.92799003626506 0.956108282354665 0.0437479711650522
Green bean Osteomyelitis (ieu-b-4975) All - Inverse variance weighted 0.617497358616773 0.225887552069073 0.0062636710728431
Green bean Bone morphogenetic protein 7 (prot-a-257) rs117462537 -2.51098445100749 1.09003976167767 0.0212467132390134
Green bean Bone morphogenetic protein 7 (prot-a-257) All - Inverse variance weighted -0.640997068084718 0.276356400044742 0.0203702149084794
Green bean Bone morphogenetic protein receptor type-1A (prot-a-259) rs149262767 2.22728105798262 1.01669737337102 0.028473357956193
Green bean Bone morphogenetic protein receptor type-1A (prot-a-259) All - Inverse variance weighted 0.645772172048343 0.272916344771808 0.0179721745769607
Green bean Bone morphogenetic protein receptor type-1A (prot-a-259) All - MR Egger 1.27677450931359 0.566910885705203 0.0408869457022262
Green bean Non-cancer illness code self-reported: osteoporosis (ukb-a-87) rs1153592 -0.0326339271977599 0.0132980091695129 0.0141258881069344
Green bean Non-cancer illness code self-reported: osteoporosis (ukb-a-87) All - Inverse variance weighted -0.0064857652081571 0.0032221889249119 0.0441309923237548
Green bean Diagnoses - secondary ICD10: M06.99 Rheumatoid arthritis, unspecified (Site unspecified) (ukb-b-11874) rs7047957 -0.0109842702862307 0.0054785573042957 0.0449676740755499
Green bean Diagnoses - secondary ICD10: M06.99 Rheumatoid arthritis, unspecified (Site unspecified) (ukb-b-11874) All - Inverse variance weighted -0.0087098303317142 0.0036733933821545 0.0177372269823292
Green bean Non-cancer illness code, self-reported: osteoarthritis (ukb-b-14486) rs7047957 0.0653472079310684 0.026344496837057 0.013120268470953
Green bean Non-cancer illness code, self-reported: spine arthritis/spondylitis (ukb-b-5389) rs73790412 0.0214035933856265 0.0083365751536993 0.0102454755809119
Green bean Non-cancer illness code, self-reported: spine arthritis/spondylitis (ukb-b-5389) All - Inverse variance weighted 0.0088988677659132 0.0030551800466192 0.003583018198204
Green bean Operation code: reduction or fixation of bone fracture (ukb-b-847) rs7047957 0.052247165877795 0.0199669837065934 0.0088790071143292
Green bean Operation code: reduction or fixation of bone fracture (ukb-b-847) All - Inverse variance weighted 0.0159627976495802 0.0066400946585476 0.0162167058743806
Green bean Fractured bone site(s): Wrist (ukb-b-9571) All - Inverse variance weighted 0.008520847352313 0.0043144072457478 0.048270961419482
Green bean Diagnoses - main ICD10: M65 Synovitis and tenosynovitis (ukb-d-M65) rs117462537 0.0198288142101547 0.0091674113502159 0.0305436676369953
Green bean Diagnoses - main ICD10: M65 Synovitis and tenosynovitis (ukb-d-M65) rs79842475 0.0257953980920759 0.0097179303362449 0.0079446584542472
Green bean Diagnoses - main ICD10: M65 Synovitis and tenosynovitis (ukb-d-M65) All - Inverse variance weighted 0.0047071868084626 0.0022488458795814 0.0363351690671054
Green bean Diagnoses - main ICD10: S02 Fracture of skull and facial bones (ukb-d-S02) rs73790412 -0.0131770722917108 0.0062112306550773 0.0338804726126381
Green bean Diagnoses - main ICD10: S02 Fracture of skull and facial bones (ukb-d-S02) All - MR Egger 0.0108175887566262 0.0035917811061833 0.0100098936429822
Green bean Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) rs149262767 0.0161592182812605 0.0076543518313092 0.0347624136774696
Green bean Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) rs7047957 -0.0186197131429901 0.007800748011417 0.0169904741429925
Green bean Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) rs75384405 0.0200609686139453 0.00661584942423 0.0024273087859891
Green bean Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) All - Inverse variance weighted 0.0050132499503682 0.0022669861329953 0.0270070262674884
Green bean Diagnoses - main ICD10: S61 Open wound of wrist and hand (ukb-d-S61) All - MR Egger 0.0126463244489471 0.0043194580694157 0.0110203858893088
Green bean Heel bone mineral density (BMD) (ukb-e-3148_AFR) rs11485443 -5.94613767455172 2.56052318704454 0.0202202619933257
Green bean Heel bone mineral density (BMD) (ukb-e-3148_AFR) All - Inverse variance weighted -1.18055889916724 0.57547489341502 0.0402229870227175
Green bean Heel bone mineral density (BMD) T-score, automated (ukb-e-78_p1_AFR) rs11485443 -5.99180693472493 2.56509011306187 0.0194961910017894
Green bean Heel bone mineral density (BMD) T-score, automated (ukb-e-78_p1_AFR) All - Inverse variance weighted -1.26070826463282 0.576309773763908 0.0287021671933129