ONMR: An Orthopedic and Nutritional Mendelian Randomization Database

Sliced bread (ukb-b-4566)

Mendelian Randomization Results

Intake (exposure) Outcome Method Number of SNPs b se P-value
Sliced bread (👉 📊) Total body bone mineral density (ebi-a-GCST005348) Weighted median 15 -0.093488486 0.047217709 0.047709662
Sliced bread (👉 📊) Osteopontin levels (ebi-a-GCST90010244) Weighted median 12 0.733317655 0.320235893 0.022025397
Sliced bread (👉 📊) Osteopontin levels (ebi-a-GCST90010244) Weighted mode 12 0.770304543 0.334275779 0.041707899
Sliced bread (👉 📊) Bone disorder (ebi-a-GCST90038652) MR Egger 14 0.010849304 0.004836417 0.044535422
Sliced bread (👉 📊) Osteoporosis (ebi-a-GCST90038656) MR Egger 14 0.009874217 0.004124921 0.033899958
Sliced bread (👉 📊) Malignant neoplasm of bone and articular cartilage (finn-b-C3_BONE_CARTILAGE) Weighted median 15 2.270485236 1.001130416 0.023333989
Sliced bread (👉 📊) Malignant neoplasm of bone and articular cartilage (all cancers excluded) (finn-b-C3_BONE_CARTILAGE_EXALLC) Weighted median 15 2.235481353 1.011830513 0.027150745
Sliced bread (👉 📊) Adhesive capsulitis of shoulder (finn-b-M13_ADHCAPSULITIS) Inverse variance weighted 15 -0.319535197 0.136561757 0.019291044
Sliced bread (👉 📊) Other specified/unspecified disorders of bone/cartilage (finn-b-M13_BONEDISNAS) MR Egger 15 2.807071977 0.944507678 0.010805311
Sliced bread (👉 📊) Radial styloid tenosynovitis [de Quervain] (finn-b-M13_DEQUERVAIN) Inverse variance weighted 15 -0.533761303 0.26225853 0.041825866
Sliced bread (👉 📊) Internar derangement of knee (finn-b-M13_KNEEDERANGEMENTS) MR Egger 15 0.435719074 0.167543886 0.021979841
Sliced bread (👉 📊) Articial joint operation, menisceal resection (finn-b-OPER_ARTIF_JOINT_MENISC_RESECT) MR Egger 15 0.440958837 0.155816326 0.014190828
Sliced bread (👉 📊) Pain (limb, back, neck, head abdominally) (finn-b-PAIN) Weighted median 15 -0.097286547 0.049503991 0.049388046
Sliced bread (👉 📊) Other/unspecified rheumatoid arthritis (finn-b-RHEUMA_NOS) MR Egger 15 -1.103653349 0.449871083 0.029034237
Sliced bread (👉 📊) Dislocation, sprain and strain of joints and ligaments of knee (finn-b-ST19_DISLO_SPRAIN_STRAIN_JOINTS_LIGAM_KNEE) Inverse variance weighted 15 0.145995605 0.06889117 0.034071807
Sliced bread (👉 📊) Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) MR Egger 15 -0.443455157 0.163328067 0.01767678
Sliced bread (👉 📊) Open wound of ankle and foot (finn-b-ST19_OPEN_WOUND_ANKLE_FOOT) Inverse variance weighted 15 0.41022004 0.201400218 0.041666068
Sliced bread (👉 📊) Traumatic amputation of wrist and hand (finn-b-ST19_TRAUMAT_AMPUT_WRIST_HAND) Inverse variance weighted 15 -0.583967317 0.294656095 0.04749484
Sliced bread (👉 📊) Shoulder region (finn-b-Z21_SHOUL_REGION) MR Egger 15 -4.66010602 1.829478592 0.024319623
Sliced bread (👉 📊) Bone sialoprotein 2 (prot-a-1396) Weighted median 15 -0.365948918 0.184236472 0.047000015
Sliced bread (👉 📊) Diagnoses - main ICD10: M17 Gonarthrosis [arthrosis of knee] (ukb-a-563) Weighted median 14 0.005490349 0.002473615 0.026448294
Sliced bread (👉 📊) Diagnoses - main ICD10: S52 Fracture of forearm (ukb-a-590) Weighted median 14 -0.003545918 0.001719183 0.039154429
Sliced bread (👉 📊) Diagnoses - main ICD10: S52 Fracture of forearm (ukb-a-590) Inverse variance weighted 14 -0.00297221 0.001277591 0.019996333
Sliced bread (👉 📊) Heel bone mineral density (BMD) (left) (ukb-b-1096) MR Egger 15 0.130307252 0.05159827 0.025343308
Sliced bread (👉 📊) Heel bone mineral density (BMD) (left) (ukb-b-1096) Weighted median 15 0.052708683 0.025914964 0.041960754
Sliced bread (👉 📊) Heel bone mineral density (BMD) T-score, automated (left) (ukb-b-15730) MR Egger 15 0.124784653 0.053064936 0.035124688
Sliced bread (👉 📊) Neck/shoulder pain for 3+ months (ukb-b-16118) Inverse variance weighted 15 -0.022661717 0.010372943 0.02891122
Sliced bread (👉 📊) Operative procedures - main OPCS: W26.2 Manipulation of fracture of bone NEC (ukb-b-1935) Inverse variance weighted 4 0.002003728 0.000996655 0.044383253
Sliced bread (👉 📊) Heel bone mineral density (BMD) T-score, automated (right) (ukb-b-20032) MR Egger 15 0.1517644 0.048135241 0.00762929
Sliced bread (👉 📊) Heel bone mineral density (BMD) T-score, automated (right) (ukb-b-20032) Weighted median 15 0.054721019 0.025043233 0.028884295
Sliced bread (👉 📊) Ankle spacing width (ukb-b-4080) Inverse variance weighted 15 -0.0380819 0.015598314 0.01462998
Sliced bread (👉 📊) Heel bone mineral density (BMD) (right) (ukb-b-4657) MR Egger 15 0.157163509 0.048911299 0.006792303
Sliced bread (👉 📊) Heel bone mineral density (BMD) (right) (ukb-b-4657) Weighted median 15 0.054653534 0.026042736 0.035851335
Sliced bread (👉 📊) Fractured bone site(s): Spine (ukb-b-873) Weighted median 4 -0.002649209 0.001231525 0.031463438
Sliced bread (👉 📊) Fractured bone site(s): Spine (ukb-b-873) Inverse variance weighted 4 -0.003110336 0.00101815 0.002251425
Sliced bread (👉 📊) Diagnoses - main ICD10: S42 Fracture of shoulder and upper arm (ukb-d-S42) Inverse variance weighted 14 0.001796273 0.000892569 0.044169902
Sliced bread (👉 📊) Heel bone mineral density (BMD) (left) (ukb-e-4105_AFR) Inverse variance weighted 10 -0.527065617 0.245033554 0.031476702

Mendelian Randomization Results (Single SNP)

Intake (exposure) Outcome SNP b se P-value
Sliced bread Osteopontin levels (ebi-a-GCST90010244) rs117466345 7.83031005722407 3.7564797845682 0.037116453188092
Sliced bread Osteopontin levels (ebi-a-GCST90010244) rs7209025 -2.37710449740176 0.875131500073442 0.0066019530975165
Sliced bread Osteopontin levels (ebi-a-GCST90010244) rs74184761 -3.52668409071748 1.09691737939778 0.0013040528970714
Sliced bread Bone disorder (ebi-a-GCST90038652) All - MR Egger 0.0108493035344833 0.0048364169166537 0.0445354224998009
Sliced bread Osteoporosis (ebi-a-GCST90038656) rs7965336 -0.0102206409389005 0.0047140459937969 0.0301491777007969
Sliced bread Osteoporosis (ebi-a-GCST90038656) All - MR Egger 0.0098742167110062 0.0041249207152538 0.0338999577083423
Sliced bread Malignant neoplasm of bone and articular cartilage (finn-b-C3_BONE_CARTILAGE) rs79885987 5.88803292900388 2.35690473002023 0.0124823725036299
Sliced bread Malignant neoplasm of bone and articular cartilage (all cancers excluded) (finn-b-C3_BONE_CARTILAGE_EXALLC) rs79885987 5.8986051691206 2.35831436203579 0.0123774845559527
Sliced bread Adhesive capsulitis of shoulder (finn-b-M13_ADHCAPSULITIS) rs896961 -1.48605290225518 0.52810144460308 0.0048936308295836
Sliced bread Adhesive capsulitis of shoulder (finn-b-M13_ADHCAPSULITIS) All - Inverse variance weighted -0.319535196977811 0.13656175738192 0.0192910440925769
Sliced bread Other specified/unspecified disorders of bone/cartilage (finn-b-M13_BONEDISNAS) rs117466345 2.73291693159292 1.06743464113401 0.0104591985219469
Sliced bread Other specified/unspecified disorders of bone/cartilage (finn-b-M13_BONEDISNAS) All - MR Egger 2.80707197732734 0.944507677962292 0.0108053107748925
Sliced bread Radial styloid tenosynovitis [de Quervain] (finn-b-M13_DEQUERVAIN) All - Inverse variance weighted -0.533761303433559 0.262258529500108 0.041825865767322
Sliced bread Internar derangement of knee (finn-b-M13_KNEEDERANGEMENTS) rs896961 0.482046086062113 0.228741614086799 0.0350844329311964
Sliced bread Internar derangement of knee (finn-b-M13_KNEEDERANGEMENTS) All - MR Egger 0.435719073705461 0.167543886415375 0.0219798409765443
Sliced bread Articial joint operation, menisceal resection (finn-b-OPER_ARTIF_JOINT_MENISC_RESECT) rs2826965 -0.524094193677313 0.256391404101131 0.0409419261984763
Sliced bread Articial joint operation, menisceal resection (finn-b-OPER_ARTIF_JOINT_MENISC_RESECT) All - MR Egger 0.440958836903378 0.155816325766949 0.0141908278367403
Sliced bread Pain (limb, back, neck, head abdominally) (finn-b-PAIN) rs79885987 0.260781922879032 0.124047617369486 0.035529392197537
Sliced bread Other/unspecified rheumatoid arthritis (finn-b-RHEUMA_NOS) rs117638730 -4.42394344313238 1.77089807333748 0.0124848442459238
Sliced bread Other/unspecified rheumatoid arthritis (finn-b-RHEUMA_NOS) All - MR Egger -1.10365334896178 0.449871082663103 0.0290342370606963
Sliced bread Dislocation, sprain and strain of joints and ligaments of knee (finn-b-ST19_DISLO_SPRAIN_STRAIN_JOINTS_LIGAM_KNEE) rs117466345 0.481355425066387 0.209821595541759 0.0217837419717068
Sliced bread Dislocation, sprain and strain of joints and ligaments of knee (finn-b-ST19_DISLO_SPRAIN_STRAIN_JOINTS_LIGAM_KNEE) All - Inverse variance weighted 0.145995604537227 0.0688911703098572 0.0340718069869474
Sliced bread Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) rs117466345 -0.369525376818641 0.185136701948611 0.0459383208888935
Sliced bread Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) rs7675682 0.594974940812389 0.258235651394266 0.0212226435871005
Sliced bread Injuries to the shoulder and upper arm (finn-b-ST19_INJURI_SHOUL_UPPER_ARM) All - MR Egger -0.443455156567311 0.163328066723403 0.0176767803658545
Sliced bread Open wound of ankle and foot (finn-b-ST19_OPEN_WOUND_ANKLE_FOOT) All - Inverse variance weighted 0.410220040425096 0.20140021796591 0.0416660682171887
Sliced bread Traumatic amputation of wrist and hand (finn-b-ST19_TRAUMAT_AMPUT_WRIST_HAND) All - Inverse variance weighted -0.583967316718276 0.294656094814098 0.0474948402217409
Sliced bread Shoulder region (finn-b-Z21_SHOUL_REGION) rs2826965 5.47282533901165 2.78071559594977 0.049052438464021
Sliced bread Shoulder region (finn-b-Z21_SHOUL_REGION) All - MR Egger -4.66010602024042 1.82947859166846 0.0243196227649754
Sliced bread Bone sialoprotein 2 (prot-a-1396) rs74952756 -1.1764606843255 0.517726884336447 0.0230649129760628
Sliced bread Diagnoses - main ICD10: M17 Gonarthrosis [arthrosis of knee] (ukb-a-563) rs117466345 -0.0150149979429255 0.006959382129633 0.0309652620966146
Sliced bread Diagnoses - main ICD10: S52 Fracture of forearm (ukb-a-590) rs61937025 -0.0110092453979884 0.0048962845385952 0.02454498056548
Sliced bread Diagnoses - main ICD10: S52 Fracture of forearm (ukb-a-590) All - Inverse variance weighted -0.0029722098400612 0.0012775913542482 0.0199963325028498
Sliced bread Heel bone mineral density (BMD) (left) (ukb-b-1096) rs12191202 0.15610336723251 0.0655765844949151 0.0172903719701705
Sliced bread Heel bone mineral density (BMD) (left) (ukb-b-1096) rs7209025 -0.145767980277966 0.0690358513860604 0.0347308752115169
Sliced bread Heel bone mineral density (BMD) (left) (ukb-b-1096) All - MR Egger 0.130307252378255 0.0515982695108962 0.0253433075036562
Sliced bread Heel bone mineral density (BMD) T-score, automated (left) (ukb-b-15730) rs12191202 0.156854182107737 0.0656034485133866 0.0168051085674641
Sliced bread Heel bone mineral density (BMD) T-score, automated (left) (ukb-b-15730) rs7209025 -0.149885470879433 0.0690572883791648 0.0299726855891642
Sliced bread Heel bone mineral density (BMD) T-score, automated (left) (ukb-b-15730) All - MR Egger 0.124784653358023 0.0530649355252883 0.0351246875423752
Sliced bread Neck/shoulder pain for 3+ months (ukb-b-16118) All - Inverse variance weighted -0.0226617167914744 0.0103729432380939 0.0289112201306941
Sliced bread Operative procedures - main OPCS: W26.2 Manipulation of fracture of bone NEC (ukb-b-1935) rs7209025 0.0045430546127248 0.0019980468517393 0.0229811550243068
Sliced bread Operative procedures - main OPCS: W26.2 Manipulation of fracture of bone NEC (ukb-b-1935) All - Inverse variance weighted 0.0020037281345612 0.0009966549874181 0.0443832525840302
Sliced bread Heel bone mineral density (BMD) T-score, automated (right) (ukb-b-20032) rs12191202 0.138008039918554 0.0652696458633544 0.0344786326309465
Sliced bread Heel bone mineral density (BMD) T-score, automated (right) (ukb-b-20032) rs7209025 -0.155480129098336 0.0687537961341956 0.0237342337479782
Sliced bread Heel bone mineral density (BMD) T-score, automated (right) (ukb-b-20032) All - MR Egger 0.151764400480589 0.0481352407516252 0.0076292900667794
Sliced bread Ankle spacing width (ukb-b-4080) rs7209025 -0.105688742799751 0.0451782644769175 0.0193162169578488
Sliced bread Ankle spacing width (ukb-b-4080) rs7633045 -0.128032308922483 0.04385032889774 0.0035030431247743
Sliced bread Ankle spacing width (ukb-b-4080) rs7965336 -0.14942038839504 0.0421443452281268 0.0003919532325241
Sliced bread Ankle spacing width (ukb-b-4080) All - Inverse variance weighted -0.0380819000838746 0.0155983138027985 0.0146299804823622
Sliced bread Heel bone mineral density (BMD) (right) (ukb-b-4657) rs12191202 0.132895472792949 0.0652750186670487 0.0417572247826105
Sliced bread Heel bone mineral density (BMD) (right) (ukb-b-4657) rs7209025 -0.160197458525373 0.0687597508545024 0.0198159621019069
Sliced bread Heel bone mineral density (BMD) (right) (ukb-b-4657) All - MR Egger 0.157163508636403 0.0489112991214563 0.0067923032950628
Sliced bread Fractured bone site(s): Spine (ukb-b-873) rs2826965 -0.0052050471401989 0.0019503467882263 0.007612722183875
Sliced bread Fractured bone site(s): Spine (ukb-b-873) rs7209025 -0.0044154251074827 0.0019749782652708 0.0253725508709926
Sliced bread Fractured bone site(s): Spine (ukb-b-873) All - Inverse variance weighted -0.0031103356211446 0.0010181495244528 0.0022514247639848
Sliced bread Diagnoses - main ICD10: S42 Fracture of shoulder and upper arm (ukb-d-S42) rs7633045 0.0066851860233547 0.0032505054162517 0.039718896347436
Sliced bread Diagnoses - main ICD10: S42 Fracture of shoulder and upper arm (ukb-d-S42) All - Inverse variance weighted 0.0017962726203251 0.0008925689642128 0.044169901935721
Sliced bread Heel bone mineral density (BMD) (left) (ukb-e-4105_AFR) rs7675682 -1.75827490321328 0.820569605870419 0.0321332388217155
Sliced bread Heel bone mineral density (BMD) (left) (ukb-e-4105_AFR) All - Inverse variance weighted -0.527065617202741 0.245033554438033 0.0314767016766828